Mar 2020 – Julia Kaltschmidt

Dr. Kaltschmidt is a Wu Tsai Neurosciences Institute Faculty Scholar and an Associate Professor in the Department of Neurosurgery at Stanford Medical School. Originally from Germany, she received her undergraduate degree in Molecular Biology and Biochemistry from the University of Madison, Wisconsin. She then completed her PhD at the University of Cambridge in the UK, where she trained as a developmental biologist and studied the cellular mechanisms underlying early Drosophila nervous system development. During her postdoc at Columbia University, she began working with mouse as a model system, and became interested in mechanisms that underlie sensory-motor circuit connectivity in the spinal cord. She continued to explore the development and molecular regulation of spinal circuity as an Assistant Professor at the Sloan Kettering Institute in New York City. During this time, the focus of her laboratory further expanded to include neuronal circuits that underlie sexual function and gut motility.

Her lab’s goal is to understand the molecular basis of neuronal circuit formation. They are particularly interested in circuits that underlie locomotion, sexual function and gut motility.

See more of her work here.

Feb 2020 – Marcelo Dietrich

Dr. Dietrich is an Assistant Professor of Comparative Medicine and Neuroscience at Yale University. His research program focuses on the molecular and cellular mechanisms that play a role in behavior and how these processes are regulated by energy metabolism. It is their working assumption that energy and fuel availability (through hunger) are key regulators of biological functions from molecular to systemic levels. Focusing on mouse models, his lab applies a variety of genetic tools to manipulate cell function in combination with electrophysiological, morphological and behavioral analyzes. It is his goal to build a multidisciplinary approach to integrative physiology, from identification of cell specific mechanisms to the exploration of how these pathways are related to whole body physiology and behavior.

He shared his recent work on neonatal development of ingestion.

See more of his work here.

JOIN US: FEB 4, 2020 @ 4PM in MSRB3 1125

November 2019: Gary Schwartz

Gary J. Schwartz, Ph.D., is a professor of medicine, neuroscience, and psychiatry at the Albert Einstein College of Medicine. His lab studies how the gut and the brain interact with each other to regulate food intake and associated metabolic processes.  Their research focuses on the sensory neural controls of energy homeostasis in health and disease. They have identified the type of food stimuli that activate vagal and splanchnic sensory fibers supplying the gut, and have revealed the extent to which these stimuli influence gut-brain communication.

Their most recent efforts involve the analysis of gut-brain communication in the control of energy homeostasis in mouse models of obesity and diabetes.We have identified neurons in the periphery, brainstem and hypothalamus that integrate food-elicited signals with peptide signals that have profound effects food intake and metabolism. Data from these studies reveal that central hypothalamic and brainstem neuropeptides affect food intake and body weight by modulating the neural potency of food stimulated signals from the mouth and gut. This novel, synthetic conceptual framework is critical because it links forebrain hypothalamic structures, long known to be involved in the control of energy balance, to the sensory and motor systems in the brainstem that control ingestion, digestion, and metabolic processing of food. Future studies will use genetic mouse models of obesity and diabetes with targeted conditional neuropeptide/ receptor knockdown or replacement to determine how central neuropeptide signaling affects the neural processing of metabolic sensory signals critical to energy homeostasis.

See some of his work here.

October 2019 – Jim Bayrer

Dr. James Bayrer is an Assistant Professor of Pediatrics at the University of California, San Francisco. As a practicing pediatric gastroenterologist and physician scientist, his work focuses on the mechanisms underlying diseases like inflammatory bowel disease (IBD) and irritable bowel syndrome (IBS). IBD is a multisystem problem, sitting at the intersection of the immune system, the microbiome, and the intestinal epithelium—he has focused his career on studying the latter. During his early work, he studied Liver Receptor Homolog-1 (LRH-1), a nuclear hormone receptor. He found that LRH-1 is critical for GI development and epithelial renewal. His team discovered that LRH-1 knockout in mice induces intestinal inflammation due to increased apoptosis and decreased Notch signaling. Using mouse and human organoids, he found this is a conversed mechanism. He further showed that overexpression of LRH-1 is protective against harsh chemotherapeutics and inflammatory molecules. To further investigate the role of the intestinal epithelium in health and disease, he collaborated with Dr. Nick Bellono on a landmark paper establishing that enterochromaffin cells form functional synapses with sensory nerve fibers, and that enterochromaffin cell activation triggers visceral mechanical hypersensitivity— a feature of IBS. Interestingly, in looking again at LRH-1, he found LRH-1 knockout mice have disrupted enteroendocrine and enterochromaffin cell development. In fact, his preliminary data show LRH-1 knockout mice demonstrate visceral hyposensitivity despite no change in mechanical compliance or GI transit time. By continuing to investigate this and other molecular pathways, he aims to discover targets to improve the clinical syndromes of IBD and IBS.  

See his lab’s webpage here.

Sep 2019 – Gary Wu

Dr. Wu is the Ferdinand G. Weisbrod Professor in Gastroenterology at the Perelman School of Medicine at the University of Pennsylvania where he is the Associate Chief for Research in the Division of Gastroenterology and is also the Associate Director of the Center for Molecular Studies in Digestive and Liver Disease. He is currently Director and Chair of the Scientific Advisory Board for the American Gastroenterological Association Center for Gut Microbiome Research and Education and is an elected member of both the American Society for Clinical Investigation and the American Association of Physicians. The research programs in the Wu laboratory focus on the mutualistic interactions between the gut microbiota and the host with a particular focus on metabolism. Growing evidence suggests that diet impacts upon both the structure and function of the gut microbiota that, in turn, influences the host in fundamental ways. Current areas of investigation include the effect of diet on the composition of the gut microbiota and its subsequence effect on host metabolism related to nitrogen balance as well as its impact on metabolic pathways in the intestinal epithelium, principally fatty acid oxidation. Through a UH3 roadmap initiate grant, he is helping to direct a project investigating the impact of diet on the composition of the gut microbiome and its relationship to therapeutic responses associated with the treatment of patients with Crohn’s disease using an elemental diet. Finally, Dr. Wu is leading a multidisciplinary group of investigators using phosphorescent nanoprobe technology to examine the dynamic oxygen equilibrium between the host and the gut microbiota at the intestinal mucosal interface. 

During his Gastronauts seminar, he shared some of his most recent findings on the role of the microbiota in interacting with three key components: Molecular oxygen, Urea, and bile acids.

See some of his work here.

Episode 1: Embrace The No (Transcript)

Peter [0:00]

So what are you feeling, Cheryl? What are you thinking?

Dr. Nickerson [0:04]

It might be a type of dessert, it seems like it has maybe some kind of a cream in it, but it’s overall a drier consistency. I would say semi-sweet, not very sweet, but a little sweet.

Peter [0:16]

If you had to use one word to describe how you felt when that went in your mouth.

Dr. Nickerson [0:23] 

I’m doing a hyphen: semi-sweet-dry […] That’s two hyphens. Semi-sweet-dry.

Peter [0:29]

You can open up your eyes now.

Dr. Nickerson [0:32]

It’s a moon pie! Not too far off.

Peter [0:37]

Space, moon, pie and we tried to get it all together.

Dr. Nickerson [0:38] 

Very nice. Very nice. I’m slower to catch up on that one. Very nice.

Peter [0:54] 

Hi, my name is Peter, and I’ll be your host for The Gastronauts Podcast. Here at Gastronauts, we are going committed to understanding communication in the body, and in particular, how our gut talks to our brain. In this podcast, we aim to take a deeper dive into the mind and motivations of leading scientists and their work. So let’s dive right in- The Gastronauts Podcast: where scientists talk about their gut feelings.

In our inaugural episode, we are really excited to have Dr. Cheryl Nickerson from the Biodesign Institute at Arizona State University. Cheryl’s research focuses on the effects of space, microgravity and physical forces on bacteria and bacterial pathogens. She has collaborated with NASA to actually send bacteria on space shuttle missions, and has studied how these bacteria can change to the conditions of outer space. So welcome, Cheryl.

And the first question I had for you, which I’m sure you get this a lot, is what drew you to space? And how did you decide to bring space into bacterial research?

Dr. Nickerson [2:24] 

That’s a great question, and I have gotten that question before. And by the way, thank you for inviting me to be a part of this podcast. It’s a story of you never know what direction your life is going to take. So I was in graduate school, getting my PhD in microbiology, and I was in my last year of the program, when a new student came into the program, who already had his engineering degree from the University of Texas and he came to get a PhD in microbiology. We immediately struck up a friendship and I was instantly intrigued with how he viewed microorganisms more as circuits. He was very analytically driven as an engineer. And so I had a completely different perspective of microorganisms because I came from a hardcore life sciences background and you know, there’s signal transduction mechanisms. This is all very complex. There’s no on and off switch that is 100%. Right? It’s shades of gray, and he was very mathematically oriented.

And so we struck up a friendship, which lasts to this day. We collaborate all the time; we publish all the time; we get grants together all the time. And long story short, for my postdoc, I went and took a position in bacterial pathogenesis and focused a lot on the foodborne pathogen- Salmonella, and studying how it interacted with human intestinal cells and how it interacted with animal model intestinal tract-like mice to cause disease. And he went to the NASA Johnson Space Center and started working in their microbiology group. So he was involved in sampling microbes from the air and water systems in the space shuttle on the International Space Station. And he’s an excellent microbial physiologist.

So as time went on, he now heads up microbiology at the Johnson Space Center. But after my postdoc, I had learned the mechanisms of bacterial pathogenesis, especially in enteric bacterial pathogens, and I knew how to culture intestinal cells and infect mice and study the intestinal interaction with pathogens. On the phone one night, a month after I got my first lab, my first tenure track position at Tulane University Medical School in New Orleans and he had been at NASA JSC, he commented to me on the phone in passing that the astronauts were immunocompromised in space. So now my expertise is in infectious disease, so I said, now hold on a minute, because that’s kind of half of the equation of whether you’re going to get disease after you get infection. Just because you get infection doesn’t mean you get the disease, right? It depends on the virulence of the pathogen, the dosage of pathogen and on your immune response. So you know something about the effect of spaceflight on half of that equation, the immune response; what do you know, does anyone know about the ability of the microgravity environment of spaceflight to impact the virulence of a pathogen?

Well, nobody knew about that, so that’s how this collaboration started. We did ground-based experiments that gave a strong indication that spaceflight culture might impact the virulence of the pathogen and its stress responses and its gene expression and that led into multiple spaceflight experiments that further showed and proved that the microgravity environment spaceflight did increase the virulence of this pathogen and it did change its gene expression and it did change it stress responses. We have leveraged those findings into mechanistic studies of a lot of different ways: we found that other bacterial pathogens can use similar signaling mechanisms to Salmonella in spaceflight, we have identified ways to turn off that increased virulence in flight. That also led us into doing three-dimensional cell culture under the same kinds of physical forces.

Peter [5:49] 

It sounds like to me a lot of this was bred from you working with someone who is in a field completely different from your own. Someone, who studied engineering background, was thinking about how systems function from more mathematical perspective, and you’re coming in, bringing your expertise in microbiology and virulence. And it kind of seemed to be a perfect storm: him at NASA; him studying the immune response and astronauts and you looking a little bit at bacteria, and how can we get the immune system to interplay with bacteria, which is essential for us to understand how human health is going to progress. And I was interested in teasing a little bit more into space. How did you decide- Was it an aha moment? Like, this is the way I want to go? Did you have any doubts? Were you thinking about other things with regards to microbial pathogenesis, because bacteria are not frequently studied in space? It’s not something that I think of, you know, these microscopic particles sending them all the way in outer space? How did you make that leap of faith take that jump to decide to study space?

Dr. Nickerson [6:48] 

Well, first, I have to thank NASA for funding those studies. Because had I proposed those studies to NIH in the beginning, that would have been, I believe, outside their realm of what they would have been willing to fund at that point. So I thank them because that led to a very productive series of experiments that have transitioned to actually being beneficial for not only astronauts in flight to mitigate their infectious disease risk, but directly relevant to our health down here on Earth. And a question that is just a completely logical question is: why- and I get this with my colleagues- why in the world, Cheryl, would you think that you would learn anything new, or advance any aspect of infectious disease by doing microbiology in microgravity? I mean, life didn’t evolve there, right? The one force that’s been constant in the face of the earth has been gravity.

That’s a logical way to have your mind wired, and my brain is wired differently. So I thought to myself, why would you not learn something new about biological systems, microbes, human cells, whatever, when you greatly reduce the one force that’s been constant on this planet since it began? Life has evolved under unit gravity; we haven’t known anything else. Why would we not think when […] you greatly reduce that force that these emergent phenotypic properties that could be relevant to health or disease could emerge? We’ve learned that when we study cellular and biological systems in response to extreme environments, we learn more information, we learn more mechanistic insight about how cells evolve and adapt and respond. And so to me, space flight was just the next extreme environment whose potential is just beginning to be untapped.

Peter [8:33] 

This is of interest to me, especially young in my career as a developing scientist: when trailblazing into the unknown without really knowing what is going on, I think there are certainly hills and pitfalls to fall into when you’re doing research. And it’s easy to get bogged down into the weeds, and a little bit, demotivated sometimes when your results don’t quite make sense to you after […] trying to control for everything that goes wrong. I was wondering, how do you continue to motivate yourself in these pitfalls? And how do you motivate your trainees and your mentees in these situations?

Dr. Nickerson [9:08] 

So first of all, you have to be a little feisty. And you have to be just a little bit defiant, when everybody tells you, anytime you’re trailblazing, and you’re doing paradigm changing research, and you’re finding things that others haven’t seen, you’re going to hear a lot of no. Embrace the no- it’s okay. As a matter of fact, I’m someone who likes to hear no, not at first, you’ll hear no on your grants, you’ll hear no on your manuscripts. That’s okay. If you can’t hear no, and you can’t tackle no in this field [then] this is not the field for you. No motivates me, because I know the work we’re doing is good because I know the teams- I know my team, and I know my lab and I know the teams that we’re pairing with are excellent scientists. That doesn’t mean we’re right on every hypothesis, but hypothesis can be right or wrong. We know our science is good, and we believe in what we’re doing. We believe in our science; we believe in each other. And we know we’re on the right trajectory […]

I save every rejection letter from every grant from every manuscript, and I have two of them from the early stages. I won’t tell you what funding agencies they’re from. One said, we have monolayers, we don’t need 3D tissue models. You learn nothing new about bacterial pathogenesis with 3D tissue models. Okay, we can check that off the list because that just motivates you, right? So after we helped birth that field 20 years later, now it’s a really hot field. That’s great! Okay, but science takes time; this is what happens. The first grant we submitted on saying, look how physiological fluid shear forces […] just completely reprogram bacteria to do different things than [what] we do when we grow them in a shake flask at 350 RPM where we grow them statically in the lab, which is how most people grow them. I got the first rejection letter from that. This is pretty much heresy is what it says; that’s fine. Now, mechanobiology of infectious disease is a cool thing and it’s an exciting thing and it’s good, [accepting] the rejection letters is key. You will ultimately prevail, if you stay focused and determined and persevere. You have to have that fight and that feistiness and the fire in the gut. And you just do it.

Peter [11:17]

I will certainly take that with me. Accept the no.

Dr. Nickerson [11:23] 

You don’t have to like it, but just let it motivate you. And then the good thing in the end is you get all these exciting, new scientists coming in with new creative ideas. And I learned a very important lesson from one of my scientific [mentors] who I view as heroes. She always has a statement and I tell my students this all the time. She says, “Don’t be arrogant. Because just when you think you know everything- you don’t, arrogance kills curiosity.” I think that’s a beautiful statement. Every scientific discipline has so much to learn. There’s so many new discoveries to be made. One lab, one group, one team couldn’t possibly own them all. There’s room for everybody. So be accepting and don’t think you’ve learned it all. Because it’s not possible.

Peter [12:31] 

Everything you’ve told me so far really makes sense, right? Science is done in interesting circumstances. It’s always done, I think, contextually- we want to see what environment can we [create] to really stress the system and see what happens. But I really want to get to the point that when someone calls you and says space could be interesting and how it affects bacteria. What was your gut reaction? [Did it] come to your head at any point where you were like, ah, this is something that I could blend together.

Dr. Nickerson [13:00]

The whole concept of being able to identify a new biological property, phenomenon, cellular responses, molecular/genetic phenotype, did not seem at all unreasonable or surprising to me to use the microgravity platform to do- it seemed to be very exciting to use the microgravity platform to do it. But you know, it could have been wrong; we might not have seen any differences there. The aha moment to me didn’t come when we first got our grants that we wrote to fund that. The aha moment came when we got our results back and we analyzed our data and [it] just boggled our mind […] because that’s when the real excitement set in.

We were able to, to mimic some of those findings that we saw in microgravity with some special ways that we have to culture cells under conditions that kind of mimic certain aspects of microgravity on the ground. They can’t mimic everything, but they could mimic some of our key findings in flight. So we knew this isn’t just something- we were super excited first, because I thought, wow, we’re going to get to help astronauts stay healthy, right? We were super delighted with that, who wouldn’t be? But then when I realized, it doesn’t make sense to me, that bacteria would have invented or evolved the way to respond to a change in gravity. It just didn’t make sense to me, I said, this change in force must be similar to another physical environment that they encounter somewhere in their natural life cycles on Earth. Because that just didn’t make sense- they evolved into this. And it turns out, our evidence suggests they’re not responding directly to reduce force of gravity, they’re responding directly to reduce force of fluid shear, and at levels that are very similar to what they encounter in our tissues. When they affect us. That, to me, was the aha moment. Then we realized, oh my gosh, these discoveries we’re making in the microgravity platform can translate […] back down here to help you and I, so we don’t have to go to space. But we are basically unveiling responses that pathogens can make when they infect our bodies, that we can’t see other ways. So now, we have developed three-dimensional intestinal cultures that contain human tissue like structures. They have multiple cell types that are found intestinal epithelium. They have beautiful mucus. They have a top and a bottom; they’re beautifully polarized. They are showing more in vivo like responses to infection. […] We put immune cells in them. So our goal is to make those intestinal models more and more like what’s in your body. We’ve kind of taken that line of reasoning both from studying how bacterial pathogens respond to physiological fluid shear forces, and also using those same forces to develop more patient defective human tissue models outside the body to study host pathogen interactions. And that could lead could lead to, I’m not promising, could lead to a vaccine or other new types of therapeutics to help people.

Peter [15:50] 

Yeah that is a really interesting perspective. And I’ll think about that for a long time. And I was wondering, you know, where do you see the space science field, the microbiology field going in the next 10 years? And where do you see your lab moving 10 years from now?

Dr. Nickerson [16:06]

Well, that’s a great question. And I’m sure you will get different responses from different people. Ultimately, I think one of the top priorities is to move away from doing animal testing. We have to do that in my lab, because ultimately we can’t infect humans and test everything in humans. But we have to have better more predictive surrogate models. So, I think we can get there. By the way, a lot of groups are making huge strides and doing something we didn’t talk as much about, but developing human tissues and organs outside of the body with your cells that will function and be 100% predictive to how you respond to a pathogen. Nobody has one that’s 100% predictive yet, but we do this in our lab. Other labs that are doing it getting more and more predictive models for humans. That, to me is one of the major things that we must address, the fields are moving towards that direction. But that demands a multi-disciplinary approach of life scientists and engineers and physicists working together in large teams, and that’s the way science works now, which is great. Our team, your team are doing this, because no one person can be an expert and everything. And when you bring these multi-disciplinary efforts to solve these kinds of problems, we’re seeing that- we’re seeing this unveiling of new approaches to solve or help understand better, what pathogens do when they infect us. What do they do in the context of the whole microbiome that’s there that they have to get through to infect us? How did they do this with physical forces? How did they do this in health and disease? How do we make better models of humans, tissues and organs outside the body that will recapitulate every single biological, chemical, and physical factor in our bodies?

Peter [17:50] 

One thing that I really took away from what you’ve just mentioned is […] seeing something that is so disparately related, and tying it to human health is incredible. I think I am in awe of your enthusiasm that you gave at your talk, your enthusiasm in this conversation, and I was wondering, does that passion really drive you in the morning? Do you feel like it comes naturally? Or do you have to really wait for an aha moment?

Dr. Nickerson [18:12]

It’s absolutely natural. I’ve always said, If I do not absolutely love what I do, I will change in a heartbeat. I am beyond passionate about my commitment to my scientific discipline and field. It drives almost everything that I do. And my team members that I have the pleasure to work with in my laboratory have that same fire in the gut. So yes, we have lives outside the lab, but we kind of eat sleep and breathe this, because we love it. You have to have that fire in your gut. When you find what is right, […] it just drives you to do you get up in the morning, and you can’t wait to figure out what’s next. It’s constantly a puzzle to solve. So the passion is there; we feed off of it; we feed off of each other; we feed off of the discoveries, because at the end of the day, it’s all about leaving this world a little bit better than when you were here. And if any of our findings, any of our work, any our studies translate to coming up with better or novel approaches to combat and treat and prevent infectious disease. That’s what we’re learning to do.

Peter [19:22] 

That was a very motivating end to our conversation, Cheryl; and I want to thank you so much for being the first guest on The Gastronauts Podcast.

Dr. Nickerson [19:29] 

It is my honor, thank you for the invitation.

Peter [19:43] 

Well, what a way to end our first episode, Dr. Nickerson gave us a lot of advice to digest. But what really stuck out to me is the importance of accepting uncertainty and embracing challenge. We never really know where we’re going to end up, or how the world will view our science. So find something that you’re passionate about and really fight for it. I want to thank you all so much for listening, and we’ll see you next time. For more of our content, you can follow us on Twitter @gutbrains, or visit our website at thinkgastronauts.com. The Gastronauts Podcast would be impossible without the incredible team that we have here. Meredith Schmehl is our producer and the music composer. Dr. Laura Rupprecht is our social media manager. And special thanks to the founders of Gastronauts: Dr. Diego Bohórquez on the Bohórquez laboratory.

May 2019 – Mauro Costa-Mattioli

Dr. Costa-Mattioli is the Cullen Foundation Endowed Chair of Neuroscience at Baylor College of Medicine. His laboratory’s primary aim is to understand the neurobiological basis of long-term memory formation. They seek to understand what happens in the brain when a memory is formed and more specifically how a labile short-term memory becomes a stable long-term memory. Disorders of learning and memory can strike the brain of individuals during development (e.g., Autism Spectrum Disorder or Down syndrome), as well as during adulthood (e.g., Alzheimer’s disease). They are also interested in understanding the specific circuits and/or molecular pathways that are primarily targeted in cognitive disorders and how they can be restored. To tackle these questions, they use a multidisciplinary, convergent and cross-species approach that combines mouse and fly genetics, molecular biology, electrophysiology, imaging, stem cell biology, optogenetics and behavioral techniques.

See his work here.

Apr 2019 – Michel Neunlist

Dr. Neunlist visited us on April 2nd, 2019. He earned his PhD in electrophysiology in 1994 at University Louis Pasteur in Strasbourg, France. In his postdoctoral position in the laboratory headed by Michael Scheman in Hannover, Germany, he worked in the field of neurogastroenterology. Since 2007, he has directed a laboratory devoted to the study of enteric nervous system and enteric neuropathies. During his visit, he shared the importance of the enteric nervous system in the gut and some exciting new techniques using optical coherence tomography to image the ENS in the intestine. Finally, he shared some interesting new findings implicating the gut in Parkinson’s disease.

See his work here.Join us! Apr 2 @ 4PM in MSRB3 1125